We have 4 tools:
Allows the substitution of motifs in a background sequence at all possible positions within the constraints of the parameters
Allows the substitution of reference positions with SNPs
Creates a specified number of random mutations on a sequence
Generates simulated sequences using PWMs.
Click here for a Python script that converts original coordinates to equal sized, centered coodinates
with range X nucleotides on each side.
Click here for a Python script for programmatically querying MPRA motifs.
Click here for a Python script for programmatically querying MPRA SNPs.